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As Helge Klein wrote in his excellent article "Configuring Citrix ShareFile Sync from PowerShell" this is simply a GUI restriction and not a restriction in the actual ShareFile sync engine.
Helge describes that you can easily do this in PowerShell with the following example:
Add-SyncJob -ApplicationId 1 -ApplicationName "PowerShell" -Account helgeklein.sharefile.com
-RemoteFolderName "foc86c19-d904-434a-9d67-xxxxxxxxxxxx" -LocalFolderPath "D:\Daten\Sync to ShareFile"
-AuthType 4 -UserName email@example.com -SyncDirection 2 -Password "MY SHAREFILE PASSWORD"
While the command was accepted, nothing was synchronized.
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